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Publications and Manuscripts


2005

  1. Anderson JC, Babb AL, and Hlastala MP. (2005). A fractal analysis of the radial distribution of bronchial capillaries around large airways. J Appl Physiol. 98, 850-855. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  2. Bassingthwaighte JB, Chizeck HJ, Atlas LE and Qian H. (2005). Multiscale modeling of cardiac cellular energetics. Ann N Y Acad Sci. 1047: 395-424. PMID: 16093514. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  3. Minard KR, Timchalk C and Corley RA. (2005). T2-Shortening of 3He Gas by Magnetic Microspheres. J Magn Res. 173, 90-96. PMID: 15705517. DOI Reference Download PDF - Grant Members Only
  4. Slikker W, Young JF, Corley RA, Doorman DC, Conolly RB, Knudsen TB, Erstad BL, Luecke RH, Faustman EM, Timchalk C, and Mattison DR. (2005). Improving predictive modeling in pediatric drug development: Pharmacokinetics, pharmacodynamics and mechanistic modeling. Ann NY Acad Sci. 1053, 505-518. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only

2006

  1. Anderson JC and Hlastala MP. (2006). The kinetics of transdermal ethanol exchange. J Appl Physiol. 100, 649-655. PMID: 16239611. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  2. Anderson JC, Lamm WJE, and Hlastala MP. (2006). Measuring airway exchange of endogenous acetone using a single-exhalation breathing maneuver. J Appl Physiol. 100, 880-889. PMID: 16282431. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  3. Asgharian B, Price OT, and Hofmann W. (2006). Prediction of particle deposition in the human lung using realistic models of lung ventilation. Aerosol Sci. 37, 1209-1221. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  4. Bassingthwaighte JB. (2006). A practical extension of hydrodynamic theory of porous transport for hydrophilic solutes. Microcirculation. 13(2): 111-118. PMID: 16459324. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  5. Dash RK, Li Z, and Bassingthwaighte JB. (2006). Simultaneous blood-tissue exchange of oxygen, carbon dioxide, bicarbonate, and hydrogen ion. Ann Biomed Eng. 34, 1129-1148. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  6. Minard KR, Einstein DR, Jacob RE, Kabilan S, Kuprat A, Timchalk C, Trease L, and Corley RA. (2006). Application of magnetic resonance (MR) imaging for the development and validation of computational fluid dynamic (CFD) models of the rat respiratory system. Inhal Toxicol. 18, 787-794. PMID: 16774868. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  7. Rubin DL, Grossman D, Neal M, Cook D, Bassingthwaighte J and Musen M. (2006). Ontology-based representation of simulation models of physiology. AMIA Annu Symp Proc. 664-668.
  8. Swift DL, Asgharian B, and Kimbell JS. (2006). Use of mathematical aerosol deposition models in predicting the distribution of inhaled therapeutic aerosols. In: Inhaled Aerosols: Physical and Biological Basis for Therapy (Second Edition), AJ Hickey, ed, Marcel Dekker, Inc., New York, NY. Submitted 3/31/06.

2007

  1. Anderson JC and Hlastala MP. (2007). Breath tests and airway gas exchange. Pulm Pharmacol Therap. 20, 112-117. PMID: 16413216. DOI Reference
  2. Anderson JC and Bassingthwaighte JB. (2007). Tracers in physiological systems modeling. In: Mathematical Modeling in Nutrition and Agriculture. Proc 9th Internat. Conference on Mathematical Modeling in Nutrition, Roanoke, VA, August 14-17, 2006, edited by Mark D. Hanigan JN and Casey L Marsteller. Virginia Polytechnic Institute and State University Blacksburg, VA, pp 125-159.
  3. Carey SA, Minard KR, Trease LL, Wagner JG, Guilherme J, Garcia M, Ballinger CA, Kimbell JS, Plopper CG, Corley RA, Postlethwait EM, and Harkema JR. (2007). Three-dimensional mapping of ozone-induced injury in the nasal airways of monkeys using magnetic resonance imaging and morphometric techniques. Toxicol Pathol. 35, 27-40. PMID: 17325970. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  4. Hlastala MP and Anderson JC. (2007). The impact of breathing pattern and lung size on the alcohol breath test. Ann Biomed Eng. 35, 264-272. PMID: 17171302. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  5. Jacob RE, Laicher G, and Minard KR. (2007). 3D MRI of Non-Gaussian 3He Gas Diffusion in the Rat Lung. J Magn Reson. 188, 357-366. PMID: 17827044. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  6. Kerckhoffs RCP, Neal ML, Gu Q, Bassingthwaighte JB, Omens JH, and McCulloch AD. (2007) Coupling of a 3D finite element model of cardiac ventricular mechanics to lumped systems models of the systemic and pulmonary circulation. Ann Biomed Eng. 35, 1-18. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  7. Neal ML and Bassingthwaighte JB. (2007). Subject-specific model estimation of cardiac output and blood volume during hemorrhage. Cardiovasc Eng. 7(3): 97-120. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  8. Robertson HT and Hlastala MP. (2007). Microsphere maps of regional blood flow and regional ventilation. J Appl Physiol. 102, 1265-1272. PMID: 17158248. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  9. Smith NA, Crampin EJ, Niederer SA, Bassingthwaighte JB, and Beard DA. (2007) Computational biology of the cardiac myocyte: proposed standards for the physiome. J Exper Biol. 210, 1576-1583. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only

2008

  1. Carlson BE, Anderson JC, Raymond GM, Dash RK and Bassingthwaighte JB. (2008). Modeling oxygen and carbon dioxide transport and exchange using a closed loop circulatory system. Oxygen Transport to Tissue XXIX. 614: 353-360. PMID: 18290346. Find it in Google Scholar DOI Reference
  2. Nazridoust K and Asgharian B. (2008). Unsteady-state airflow and particle deposition in a three-generation human lung geometry. Inhal Toxicol. 20(6): 595-610. PMID: 18444012. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  3. Chastanet, J and Wood, BD (2008). Mass transfer process in a two-region medium. Water Resources Res. 44, W05413, doi:10.1029/2006WR005553 Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  4. Bassingthwaighte JB. (2008). Linking cellular energetics to local flow regulation in the heart. Ann N Y Acad Sci. 1123: 126-133. PMID: 18375585.
  5. Minard KR, Jacob RE, Laicher G, Einstein DR, Kuprat AP and Corley RA. (2008). MR imaging of apparent He-3 gas transport in narrow pipes and rodent airways. J Magn Reson. 194(2): 182-191. PMID: 18667344. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  6. Jacob RE, Minard KR, Laicher G and Timchalk C. (2008). 3D He-3 diffusion MRI as a local in vivo morphometric tool to evaluate emphysematous rat lungs. J Appl Physiol. 105(4): 1291-1300. PMID: 18719237. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only
  7. Einstein DR, Neradilak B, Pollisar N, Minard KR, Wallis C, Fanucchi M, Carson JP, Kuprat AP, Kabilan S, Jacob RE and Corley RA. (2008). An Automated Self-Similarity Analysis of the Pulmonary Tree of the Sprague-Dawley Rat. Anatomical Record-Advances in Integrative Anatomy and Evolutionary Biology. 291(12): 1628-1648. PMID: 18951511. Find it in Google Scholar DOI Reference Download PDF - Grant Members Only

In press

  1. Kuprat, AP and Einstein DR. (2008). An anisotropic scale-invariant unstructured tetrahedral mesh generator suitable for volumentric imaging data. J Comp Physics. In press.
  2. Tawhei M, Bischoff J, Einstein D, Erdemir A, Guess T, and Reinbolt J. (2008). Multiscale modeling in computational biomechanics: Determining computational priorities and addressing current challenges. IEEE Eng Med Biol. Special Issue. In press.
  3. Ferguson RM, Minard KR, and Krishnan KM. (2008). Optimized nano-magnetic molecular probes for magnetic particle imaging. J Magnetism and Magnetic Matter. In press.
  4. Dyedov V, Einstein DR, Jiao X, Kuprat A, Carson JE, del Pin F. (2008). Variational generation of prismatic boundary-layer meshes for biomedical computing. Internat J Numer Meth Eng. In press.
  5. Corley RA, Minard KR, Kabilan S, Einstein DR, Kuprat A, Harkema JR, Kimbell JS, Gargas ML, and Kinzell JH. Magnetic resonance imaging and computational fluid dynamics (CFD) simulations of rabbit nasal airflows for the development of hybrid CFD/PBPK models. Inhal Toxicol. In press.


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